Journal of Animal Breeding and Genomics (J Anim Breed Genom)
Indexed in KCI
OPEN ACCESS, PEER REVIEWED
pISSN 1226-5543
eISSN 2586-4297
Research Article

Genomic Evaluation and Genome-Wide Association Study of a Carbon Emission Proxy Trait Derived from Carcass Weight by Age in Hanwoo Cattle

1Department of Bio-AI Convergence, Chungnam National University, Daejeon, 34134, Republic of Korea
2Institute of Agricultural Science, Chungnam National University, Daejeon, 34134, Republic of Korea
3Division of Animal & Dairy Science, Chungnam National University, Daejeon, 34134, Republic of Korea

These authors contributed equally to this work.

Correspondence to Seung Hwan Lee, E-mail: slee46@cnu.ac.kr

Volume 10, Number 2, Pages 81–92, June 2026.
Journal of Animal Breeding and Genomics 2026, 10(2), 81–92. https://doi.org/10.12972/jabng.2026.10.2.5
Received on April 10, 2026, Revised on June 26, 2026, Accepted on June 28, 2026, Published on June 30, 2026.
Copyright © 2026 Korean Society of Animal Breeding and Genetics.
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0).

ABSTRACT

Climate change mitigation and carbon neutrality have become global priorities, necessitating the reduction of greenhouse gas emissions in the livestock sector. However, the practical implementation of direct methane measurement is limited by high recording costs and the need for specialized equipment. This study investigated carcass weight by age (CWA) as a biologically meaningful proxy trait for carbon emission intensity in Hanwoo cattle. A reference population of 25,964 and a KPN population of 1,444 animals genotyped with the Hanwoo 50K SNP chip were utilized for genetic evaluation. The CWA-derived proxy trait was defined as the inverse of CWA (CWA−1), representing the production time required per unit of carcass output. Genetic parameters and genomic estimated breeding values (GEBV) were estimated using a single-step genomic BLUP (ssGBLUP) framework. The heritability of CWA−1 was estimated at 0.343, which is comparable to or higher than conventional carcass traits such as carcass weight (0.327) and marbling score (0.291). Mean genomic prediction accuracy reached 0.783 in the reference population and 0.699 in the KPN population. Genome-wide association analysis identified significant genomic regions on chromosomes 4, 6, and 14, with candidate genes including TOX, CALCR, and LCORL associated with growth and production efficiency. Genetic trend analysis showed a consistent decrease in mean GEBV over birth years, indicating a favorable genetic tendency toward improved efficiency and reduced emission intensity. Incorporating the CWA−1 trait into the selection index demonstrated that environmental improvement can be pursued without sacrificing conventional genetic gain. These results suggest that CWA-derived traits serve as practical and candidate proxy trait for achieving both production efficiency and environmental sustainability in Hanwoo cattle.
KEYWORDS

Hanwoo, Climate change, Carcass weight by Age, GEBV

INTRODUCTION

under publication

Section