Phuong Thanh N. Dinh1, Yoonji Chung1, Dong Jae Lee1, Dong Hun Kang2, Bo Hye Park2, Ki Yong Chung2* and Seung Hwan Lee1*
1Division of Animal & Dairy Science, Chungnam National University, Daejeon, 34134, Korea
2Department of Beef Science, Korea National College of Agriculture and Fisheries, Jeonju, 54874, Republic of Korea
Correspondence to Seung Hwan Lee, E-mail: slee46@cnu.ac.kr
Volume 5, Number 4, Pages 181-189, December 2021.
Journal of Animal Breeding and Genomics 2021, 5(4), 181-189. https://doi.org/10.12972/jabng.20210017
Received on 25 November, 2021, Revised on 30 December, 2021, Accepted on 31 December, 2021, Published on 31 December, 2021.
Copyright © 2021 Korean Society of Animal Breeding and Genetics.
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0).
Hanwoo (Korean cattle) is the most profitable cattle as meat-type one since 1960s with the cherished role in the food industry due to its palatability, which is performed by several characteristics such as tenderness, juiciness, or flavor. Meat tenderness is one of the most important features for the quality of meat and is affected subjectively and objectively by several factors. Therefore, it is essential to identify the distribution of potentially functional SNPs or candidate regions associated with tenderness. Starting from 12 candidate genes extracted from previous study, including CNOT3, OSCAR, NLRP5, PIBF1, ITBG3, COL11A1, COL1A, COL24A1, COL28A, COL2A1, COL4A3 and COL6A3, an association study for tenderness in 1161 Hanwoo beef cattle was performed using linear mixed model through MLMA module of GCTA software, fitting a genetic relationship matrix built from 11,227,701 SNPs of the whole genome and 7 environmental factors to predict the effects of 730 candidate SNPs. SNP that fitted to the model having the p-value < 0.01 will be in a significant association with the trait. 10 SNPs and 7 SNPs related to tenderness of semimembranosus area (S_SF) and longissimus dorsi area (D_SF) were detected, respectively. Most of them are phenotypic variations of collagen family genes, including: COL1A1, COL4A3, COL6A3 and COL11A1. This result suggests an attempt to explore effective biomarkers for meat tenderness trait in Hanwoo cattle.
Association study, Candidate gene, Connective tissue, Tenderness, Hanwoo
This research funded by Research Funding (2020-0534-01) of Chungnam National University and this work was supported by Korea Institute of Planning and Evaluation for Technology in Food, Agriculture, Forestry and Fisheries (IPET) funded by Ministry of Agriculture, Food and Rural Affairs (MAFRA) (321082-3)